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Cheesy Spaghetti Squash Au Gratin – Low Carb Dinner Idea

Alright, Here’s Why This Recipe is Always on Repeat in My House

Have you ever had one of those weeks where pasta just keeps yelling your name, but you’re maybe not feeling great about eating another giant bowl? That’s pretty much how I landed on this Cheesy Spaghetti Squash Au Gratin. I tried it once on a whim (probably after watching too many food videos when I should’ve been folding laundry) and now it’s become that “rescue dinner” that makes even the grumpiest eaters at my table resign themselves to happy silence. Also, not for nothing—the cheese pull is legit.

Why I Keep Coming Back to This?

I’ll be honest, I make this when I should be eating salad, but what I want is a creamy, cheesy hug in a bowl. My family goes absolutely mad for these golden, bubbling edges (even my son, who claims he doesn’t “like squash,” whatever that means on any given Tuesday). Plus, you’d never guess it’s low carb, which is a small victory considering the laundry list of weird diet requests that fly around here. One minor frustration—the spaghetti squash sometimes takes forever to roast. But I’ve got a workaround for impatient nights (keep reading—I’m not one for cliffhangers). Oh, and my friend Jill says her husband swears it tastes like mac and cheese with more texture; I don’t totally agree, but, hey, it’s close enough for me.

What You’ll Need (And Swaps That Actually, Kinda Work)

  • 1 medium spaghetti squash (Sometimes I’ll split two little ones instead. Also, microwaving is totally fair game if the oven feels like too much.)
  • 1 big handful (about a cup) of shredded sharp cheddar (Honestly, any cheese you love melts fine. My gran used to swear by Tillamook, but Sargento has saved me more than once.)
  • Half a cup parmesan (Fresh-grated feels fancy, but I do use the pre-grated from a tub on weeknights. Don’t stress.)
  • 2 tablespoons butter (If you want to go all-in, use salted. I tend to like the flavor better.)
  • About 1/3 cup heavy cream (I’ve also used half & half; on a diet week, whole milk in a pinch.)
  • 1 small onion, diced (Sometimes I skip this if I’m feeling lazy. Shallots are a nice sub if you’re feeling fancy.)
  • 2-3 cloves garlic, minced (Or just some from that jar if you don’t feel like mincing—no shame)
  • Pepper & salt to taste (I oversalt sometimes, so I usually taste as I go…)
  • Paprika and/or a pinch of cayenne—optional but I like a little kick

How I Actually Make It (With My Very Imperfect Methods)

  1. Prep the squash: Stab (carefully, please!) the spaghetti squash several times with a fork or small knife, then microwave it for 4-5 minutes so it’s easier to cut. Slice lengthwise. Scoop out seeds. Drizzle with a smidge of oil, sprinkle with salt, pop cut-side down on a microwave-safe plate or baking sheet (if you’re using the oven), and either microwave another 10-12 min or roast at 400°F for 35-40 min until strands are, you know, shreddy.
  2. Let it cool a sec (because getting steam-burnt is a drag) and use a fork to scrape out those wonderful squash “spaghetti” strands into a bowl. If it seems watery, blot it a bit—I learned that the messy way, when my first one came out looking like cheesy soup.
  3. Meanwhile, in a pan, melt the butter and sauté the onion until soft (I sometimes rush this, but it really is better when they’re golden and sweet). Add the garlic; sizzle a minute, but don’t let it burn!
  4. Add cream and most of your cheese, plus half the parmesan to the pan. Stir, keep the heat low, and let everything get friendly and melty. Pepper, salt, paprika, whatever spices you like (honestly, sometimes I even toss in a little dried thyme if I’m feeling ambitious).
  5. Mix strands in. Off the heat, add the squash to the cheesy mixture (if things look a little odd and lumpy, don’t worry—it sorts itself in the oven). Taste. This is where I always sneak a bite. I usually need a bit more salt. Or not. Up to you.
  6. Bake: Dump it all into a greased 8×8 pan or a dish you like—sometimes I just use the squash shells cause it looks cool. Sprinkle with the rest of the parmesan and even more cheddar if you’re a monster like me.
  7. Oven time is about 15-20 min at 400°F—until golden on top and bubbly around the edges. Broil a minute if you love super-browned cheese, but keep an eye or it will go form spectacular to burnt in, like, 30 seconds (ask me how I know).
  8. Let it cool a bit or everyone will burn their mouths (not speaking from experience, of course…).

Stuff I’ve Figured Out Along the Way (Maybe Too Late, but Hey)

  • If your squash comes out a bit “soggy,” next time scoop, salt the strands, and let them sit for ten or so minutes, then pat dry. A lifesaver for texture.
  • Tastes even better on day two, cold or reheated (well, at least I think so, but leftovers aren’t a guarantee here).
  • Using pre-shredded cheese? Don’t stress. Break up any clumps with your hands or it can come out weirdly stringy. Maybe that’s a plus.

Variations I’ve Messed Around With (Success Not Guaranteed)

  • Tossed in some leftover shredded rotisserie chicken—turns this into a main course, super hearty.
  • Broccoli or spinach stirred into the squash before baking. Pretty tasty, but don’t use frozen spinach without squeezing it to death—it made mine kind of swampy. Lesson learned.
  • Pepper jack cheese for a Southwestern thing. Pretty great, actually—though don’t go overboard, it’ll take over the whole dish.

Do You Need Fancy Equipment? Well…

This is honestly best with a decent chef’s knife and a fork. But if you don’t have a good baking dish, just pile it into the squash halves (they’re literally nature’s casserole dish). No whisk? A fork works fine. Don’t sweat it.

Cheesy Spaghetti Squash Au Gratin - Low Carb Dinner Idea

Stashing Leftovers

If you’re lucky enough to have some left, keep it in a sealed container in the fridge—will last around 3 days. It heats up nicely (oven beats microwave, but microwave is fine if you ask my son). Though honestly, in my house, it never lasts more than a day! In fact, I had to make an extra the last time I wanted leftovers for lunch. You can also check out some fun ways to reuse spaghetti squash here if you spare any.

How I Love to Serve It (Family Habits Die Hard)

We eat this with roasted green beans or just a side of sliced tomatoes with salt (especially if I can get them in summer—those garden tomatoes are the bee’s knees with cheesy food). Sometimes a fried egg on top for breakfast the next morning. Or just on its own straight from the dish—no judgment. If you’re looking for side ideas, I always drool over these oven-roasted veggies too.

Mom’s “Don’t Rush It” Pro Tips

  • Wait for the squash to cool before scraping—otherwise, things get slippery and you might end up chasing it around the kitchen (not that I have ever done that…)
  • Let the gratin sit for 10 minutes after baking. I once tried serving it straight away and had a waterfall of cheese goo flooding the plate. Not my finest moment.
  • Use a bit more cheese than you think, especially on top (who’s counting, really?)

Questions I Actually Get Asked (More Than I Expected!)

Can I make it ahead? Oh absolutely! I sometimes assemble it earlier in the day, then bake it off last minute. On second thought, it’s better not to fully bake it in advance; cheese gets a little clumpy if you reheat the whole pan.

Can you freeze this? So, yes—technically. But in my opinion, it comes out a bit watery and not as good. If you try it and find a better method, let me know!

Is this totally keto? I mean, mostly, if you’re not fussy about a few carbs. Heavy cream and cheese are all good. Just watch your sauces or extras.

Do kids really eat this? Mine have, multiple times. Even the picky youngest. At first, they were skeptical (“is that noodles?”) but the cheese works its magic—don’t tell them it’s squash if you don’t have to!

Can I use other cheese? Pretty much anything that gets melty. Swiss is nice but kind of strong (I learned the hard way), mozzarella is classic but makes it stringier. Cheese is cheese—just avoid the low-fat stuff if you can.

If you give this a go, I’d actually love to hear about your personal spin (and maybe your low-key kitchen disasters as well). Bon appétit, and if you’re wondering if this counts as a vegetable serving—uh, technically yes (but mostly it’s a cheese delivery system).

★★★★★ 4.90 from 90 ratings

Cheesy Spaghetti Squash Au Gratin – Low Carb Dinner Idea

yield: 4 servings
prep: 15 mins
cook: 50 mins
total: 50 mins
A delicious and comforting low carb dinner featuring roasted spaghetti squash, creamy cheese sauce, and a golden brown topping. This Cheesy Spaghetti Squash Au Gratin is perfect for anyone seeking a lighter take on a classic gratin dish.
Cheesy Spaghetti Squash Au Gratin - Low Carb Dinner Idea

Ingredients

  • 1 medium spaghetti squash
  • 2 tablespoons olive oil
  • 1 small yellow onion, finely chopped
  • 2 cloves garlic, minced
  • 1 cup shredded cheddar cheese
  • 1/2 cup grated Parmesan cheese
  • 1/3 cup heavy cream
  • 1 teaspoon salt
  • 1/2 teaspoon black pepper
  • 1/2 teaspoon dried thyme
  • 1/4 teaspoon smoked paprika
  • Fresh parsley, chopped, for garnish

Instructions

  1. 1
    Preheat oven to 400°F (200°C). Cut the spaghetti squash in half lengthwise and scoop out the seeds.
  2. 2
    Brush the inside of each squash half with 1 tablespoon olive oil, season with salt and pepper, and place cut-side down on a baking sheet. Roast for 35-40 minutes until tender.
  3. 3
    While the squash is roasting, heat remaining olive oil in a skillet over medium heat. Sauté onion until translucent, about 3-4 minutes. Add garlic and cook for 1 minute more.
  4. 4
    Remove squash from oven and let cool slightly. Using a fork, scrape out the spaghetti-like strands into a large bowl.
  5. 5
    Add sautéed onion and garlic, cheddar cheese, half of the Parmesan, heavy cream, thyme, and smoked paprika to the squash. Mix until well combined. Transfer mixture to a greased baking dish.
  6. 6
    Top with remaining Parmesan. Bake at 400°F (200°C) for 10-12 minutes, or until bubbly and golden brown. Garnish with fresh parsley before serving.
CLICK FOR NUTRITION INFO

Approximate Information for One Serving

Serving Size: 1 serving
Calories: 320cal
Protein: 12 gg
Fat: 22 gg
Saturated Fat: 0g
Trans Fat: 0g
Cholesterol: 0mg
Sodium: 0mg
Potassium: 0mg
Total Carbs: 14 gg
Fiber: 0g
Sugar: 0g
Net Carbs: 0g
Vitamin A: 0
Vitamin C: 0mg
Calcium: 0mg
Iron: 0mg

Nutrition Disclaimers

Number of total servings shown is approximate. Actual number of servings will depend on your preferred portion sizes.

Nutritional values shown are general guidelines and reflect information for 1 serving using the ingredients listed, not including any optional ingredients. Actual macros may vary slightly depending on specific brands and types of ingredients used.

To determine the weight of one serving, prepare the recipe as instructed. Weigh the finished recipe, then divide the weight of the finished recipe (not including the weight of the container the food is in) by the desired number of servings. Result will be the weight of one serving.

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